Association Analysis Identifies Melampsora ×columbiana Poplar Leaf Rust Resistance SNPs
Identifieur interne : 000A28 ( Main/Exploration ); précédent : 000A27; suivant : 000A29Association Analysis Identifies Melampsora ×columbiana Poplar Leaf Rust Resistance SNPs
Auteurs : Jonathan La Mantia [Canada] ; Jaroslav Klápšt [Canada, République tchèque] ; Yousry A. El-Kassaby [Canada] ; Shofiul Azam [Canada] ; Robert D. Guy [Canada] ; Carl J. Douglas [Canada] ; Shawn D. Mansfield [Canada] ; Richard Hamelin [Canada]Source :
- PLoS ONE [ 1932-6203 ] ; 2013.
Descripteurs français
- KwdFr :
- Analyse en composantes principales (MeSH), Basidiomycota (MeSH), Déséquilibre de liaison (MeSH), Feuilles de plante (génétique), Feuilles de plante (microbiologie), Gènes de plante (MeSH), Maladies des plantes (génétique), Maladies des plantes (microbiologie), Polymorphisme de nucléotide simple (MeSH), Populus (génétique), Populus (immunologie), Populus (microbiologie), Régulation de l'expression des gènes végétaux (MeSH), Résistance à la maladie (génétique), Études d'associations génétiques (MeSH).
- MESH :
- génétique : Feuilles de plante, Maladies des plantes, Populus, Résistance à la maladie.
- immunologie : Populus.
- microbiologie : Feuilles de plante, Maladies des plantes, Populus.
- Analyse en composantes principales, Basidiomycota, Déséquilibre de liaison, Gènes de plante, Polymorphisme de nucléotide simple, Régulation de l'expression des gènes végétaux, Études d'associations génétiques.
English descriptors
- KwdEn :
- Basidiomycota (MeSH), Disease Resistance (genetics), Gene Expression Regulation, Plant (MeSH), Genes, Plant (MeSH), Genetic Association Studies (MeSH), Linkage Disequilibrium (MeSH), Plant Diseases (genetics), Plant Diseases (microbiology), Plant Leaves (genetics), Plant Leaves (microbiology), Polymorphism, Single Nucleotide (MeSH), Populus (genetics), Populus (immunology), Populus (microbiology), Principal Component Analysis (MeSH).
- MESH :
- genetics : Disease Resistance, Plant Diseases, Plant Leaves, Populus.
- immunology : Populus.
- microbiology : Plant Diseases, Plant Leaves, Populus.
- Basidiomycota, Gene Expression Regulation, Plant, Genes, Plant, Genetic Association Studies, Linkage Disequilibrium, Polymorphism, Single Nucleotide, Principal Component Analysis.
Abstract
Url:
DOI: 10.1371/journal.pone.0078423
PubMed: 24236018
PubMed Central: 3827267
Affiliations:
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Le document en format XML
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Douglas</name><affiliation wicri:level="4"><nlm:aff id="aff2"><addr-line>Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Botany, University of British Columbia, Vancouver, British Columbia</wicri:regionArea><orgName type="university">Université de la Colombie-Britannique</orgName><placeName><settlement type="city">Vancouver</settlement><region type="state">Colombie-Britannique </region></placeName></affiliation></author><author><name sortKey="Mansfield, Shawn D" sort="Mansfield, Shawn D" uniqKey="Mansfield S" first="Shawn D." last="Mansfield">Shawn D. Mansfield</name><affiliation wicri:level="4"><nlm:aff id="aff3"><addr-line>Department of Wood Science, University of British Columbia, Vancouver, British Columbia, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Wood Science, University of British Columbia, Vancouver, British Columbia</wicri:regionArea><orgName type="university">Université de la Colombie-Britannique</orgName><placeName><settlement type="city">Vancouver</settlement><region type="state">Colombie-Britannique </region></placeName></affiliation></author><author><name sortKey="Hamelin, Richard" sort="Hamelin, Richard" uniqKey="Hamelin R" first="Richard" last="Hamelin">Richard Hamelin</name><affiliation wicri:level="4"><nlm:aff id="aff1"><addr-line>Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, British Columbia, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, British Columbia</wicri:regionArea><orgName type="university">Université de la Colombie-Britannique</orgName><placeName><settlement type="city">Vancouver</settlement><region type="state">Colombie-Britannique </region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="aff4"><addr-line>Natural Resources Canada, Laurentian Forestry Center, Québec, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Natural Resources Canada, Laurentian Forestry Center, Québec</wicri:regionArea><wicri:noRegion>Québec</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">24236018</idno><idno type="pmc">3827267</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3827267</idno><idno type="RBID">PMC:3827267</idno><idno type="doi">10.1371/journal.pone.0078423</idno><date when="2013">2013</date><idno 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Columbia</wicri:regionArea><orgName type="university">Université de la Colombie-Britannique</orgName><placeName><settlement type="city">Vancouver</settlement><region type="state">Colombie-Britannique </region></placeName></affiliation></author><author><name sortKey="Klapst, Jaroslav" sort="Klapst, Jaroslav" uniqKey="Klapst J" first="Jaroslav" last="Klápšt">Jaroslav Klápšt</name><affiliation wicri:level="4"><nlm:aff id="aff1"><addr-line>Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, British Columbia, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, British Columbia</wicri:regionArea><orgName type="university">Université de la Colombie-Britannique</orgName><placeName><settlement type="city">Vancouver</settlement><region type="state">Colombie-Britannique </region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="aff5"><addr-line>Department of Dendrology and Forest Tree Breeding, Faculty of Forestry and Wood Sciences, Czech University of Life Sciences Prague, Kamýcká, Czech Republic</addr-line></nlm:aff><country xml:lang="fr">République tchèque</country><wicri:regionArea>Department of Dendrology and Forest Tree Breeding, Faculty of Forestry and Wood Sciences, Czech University of Life Sciences Prague, Kamýcká</wicri:regionArea><wicri:noRegion>Kamýcká</wicri:noRegion></affiliation></author><author><name sortKey="El Kassaby, Yousry A" sort="El Kassaby, Yousry A" uniqKey="El Kassaby Y" first="Yousry A." last="El-Kassaby">Yousry A. El-Kassaby</name><affiliation wicri:level="4"><nlm:aff id="aff1"><addr-line>Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, British Columbia, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, British Columbia</wicri:regionArea><orgName type="university">Université de la Colombie-Britannique</orgName><placeName><settlement type="city">Vancouver</settlement><region type="state">Colombie-Britannique </region></placeName></affiliation></author><author><name sortKey="Azam, Shofiul" sort="Azam, Shofiul" uniqKey="Azam S" first="Shofiul" last="Azam">Shofiul Azam</name><affiliation wicri:level="4"><nlm:aff id="aff1"><addr-line>Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, British Columbia, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, British Columbia</wicri:regionArea><orgName type="university">Université de la Colombie-Britannique</orgName><placeName><settlement type="city">Vancouver</settlement><region type="state">Colombie-Britannique </region></placeName></affiliation></author><author><name sortKey="Guy, Robert D" sort="Guy, Robert D" uniqKey="Guy R" first="Robert D." last="Guy">Robert D. Guy</name><affiliation wicri:level="4"><nlm:aff id="aff1"><addr-line>Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, British Columbia, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, British Columbia</wicri:regionArea><orgName type="university">Université de la Colombie-Britannique</orgName><placeName><settlement type="city">Vancouver</settlement><region type="state">Colombie-Britannique </region></placeName></affiliation></author><author><name sortKey="Douglas, Carl J" sort="Douglas, Carl J" uniqKey="Douglas C" first="Carl J." last="Douglas">Carl J. Douglas</name><affiliation wicri:level="4"><nlm:aff id="aff2"><addr-line>Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Botany, University of British Columbia, Vancouver, British Columbia</wicri:regionArea><orgName type="university">Université de la Colombie-Britannique</orgName><placeName><settlement type="city">Vancouver</settlement><region type="state">Colombie-Britannique </region></placeName></affiliation></author><author><name sortKey="Mansfield, Shawn D" sort="Mansfield, Shawn D" uniqKey="Mansfield S" first="Shawn D." last="Mansfield">Shawn D. Mansfield</name><affiliation wicri:level="4"><nlm:aff id="aff3"><addr-line>Department of Wood Science, University of British Columbia, Vancouver, British Columbia, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Wood Science, University of British Columbia, Vancouver, British Columbia</wicri:regionArea><orgName type="university">Université de la Colombie-Britannique</orgName><placeName><settlement type="city">Vancouver</settlement><region type="state">Colombie-Britannique </region></placeName></affiliation></author><author><name sortKey="Hamelin, Richard" sort="Hamelin, Richard" uniqKey="Hamelin R" first="Richard" last="Hamelin">Richard Hamelin</name><affiliation wicri:level="4"><nlm:aff id="aff1"><addr-line>Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, British Columbia, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, British Columbia</wicri:regionArea><orgName type="university">Université de la Colombie-Britannique</orgName><placeName><settlement type="city">Vancouver</settlement><region type="state">Colombie-Britannique </region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="aff4"><addr-line>Natural Resources Canada, Laurentian Forestry Center, Québec, Canada</addr-line></nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Natural Resources Canada, Laurentian Forestry Center, Québec</wicri:regionArea><wicri:noRegion>Québec</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Basidiomycota (MeSH)</term><term>Disease Resistance (genetics)</term><term>Gene Expression Regulation, Plant (MeSH)</term><term>Genes, Plant (MeSH)</term><term>Genetic Association Studies (MeSH)</term><term>Linkage Disequilibrium (MeSH)</term><term>Plant Diseases (genetics)</term><term>Plant Diseases (microbiology)</term><term>Plant Leaves (genetics)</term><term>Plant Leaves (microbiology)</term><term>Polymorphism, Single Nucleotide (MeSH)</term><term>Populus (genetics)</term><term>Populus (immunology)</term><term>Populus (microbiology)</term><term>Principal Component Analysis (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse en composantes principales (MeSH)</term><term>Basidiomycota (MeSH)</term><term>Déséquilibre de liaison (MeSH)</term><term>Feuilles de plante (génétique)</term><term>Feuilles de plante (microbiologie)</term><term>Gènes de plante (MeSH)</term><term>Maladies des plantes (génétique)</term><term>Maladies des plantes (microbiologie)</term><term>Polymorphisme de nucléotide simple (MeSH)</term><term>Populus (génétique)</term><term>Populus (immunologie)</term><term>Populus (microbiologie)</term><term>Régulation de l'expression des gènes végétaux (MeSH)</term><term>Résistance à la maladie (génétique)</term><term>Études d'associations génétiques (MeSH)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Disease Resistance</term><term>Plant Diseases</term><term>Plant Leaves</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Feuilles de plante</term><term>Maladies des plantes</term><term>Populus</term><term>Résistance à la maladie</term></keywords><keywords scheme="MESH" qualifier="immunologie" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="immunology" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Feuilles de plante</term><term>Maladies des plantes</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term><term>Plant Leaves</term><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Basidiomycota</term><term>Gene Expression Regulation, Plant</term><term>Genes, Plant</term><term>Genetic Association Studies</term><term>Linkage Disequilibrium</term><term>Polymorphism, Single Nucleotide</term><term>Principal Component Analysis</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse en composantes principales</term><term>Basidiomycota</term><term>Déséquilibre de liaison</term><term>Gènes de plante</term><term>Polymorphisme de nucléotide simple</term><term>Régulation de l'expression des gènes végétaux</term><term>Études d'associations génétiques</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>Populus</italic> species are currently being domesticated through intensive time- and resource-dependent programs for utilization in phytoremediation, wood and paper products, and conversion to biofuels. Poplar leaf rust disease can greatly reduce wood volume. Genetic resistance is effective in reducing economic losses but major resistance loci have been race-specific and can be readily defeated by the pathogen. Developing durable disease resistance requires the identification of non-race-specific loci. In the presented study, area under the disease progress curve was calculated from natural infection of <italic>Melampsora</italic> ×<italic>columbiana</italic> in three consecutive years. Association analysis was performed using 412 <italic>P. trichocarpa</italic> clones genotyped with 29,355 SNPs covering 3,543 genes. We found 40 SNPs within 26 unique genes significantly associated (permutated <italic>P</italic><0.05) with poplar rust severity. Moreover, two SNPs were repeated in all three years suggesting non-race-specificity and three additional SNPs were differentially expressed in other poplar rust interactions. These five SNPs were found in genes that have orthologs in Arabidopsis with functionality in pathogen induced transcriptome reprogramming, Ca<sup>2+</sup>/calmodulin and salicylic acid signaling, and tolerance to reactive oxygen species. The additive effect of non-R gene functional variants may constitute high levels of durable poplar leaf rust resistance. Therefore, these findings are of significance for speeding the genetic improvement of this long-lived, economically important organism.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Steenackers, J" uniqKey="Steenackers J">J Steenackers</name></author><author><name sortKey="Steenackers, M" uniqKey="Steenackers M">M Steenackers</name></author><author><name sortKey="Steenackers, V" uniqKey="Steenackers V">V Steenackers</name></author><author><name sortKey="Stevens, M" uniqKey="Stevens M">M Stevens</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Widin, Kd" uniqKey="Widin K">KD Widin</name></author><author><name sortKey="Schipper, Al" uniqKey="Schipper A">AL Schipper</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Newcombe, G" uniqKey="Newcombe G">G Newcombe</name></author><author><name sortKey="Stirling, B" uniqKey="Stirling B">B 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Douglas</name><name sortKey="El Kassaby, Yousry A" sort="El Kassaby, Yousry A" uniqKey="El Kassaby Y" first="Yousry A." last="El-Kassaby">Yousry A. El-Kassaby</name><name sortKey="Guy, Robert D" sort="Guy, Robert D" uniqKey="Guy R" first="Robert D." last="Guy">Robert D. Guy</name><name sortKey="Hamelin, Richard" sort="Hamelin, Richard" uniqKey="Hamelin R" first="Richard" last="Hamelin">Richard Hamelin</name><name sortKey="Hamelin, Richard" sort="Hamelin, Richard" uniqKey="Hamelin R" first="Richard" last="Hamelin">Richard Hamelin</name><name sortKey="Klapst, Jaroslav" sort="Klapst, Jaroslav" uniqKey="Klapst J" first="Jaroslav" last="Klápšt">Jaroslav Klápšt</name><name sortKey="Mansfield, Shawn D" sort="Mansfield, Shawn D" uniqKey="Mansfield S" first="Shawn D." last="Mansfield">Shawn D. Mansfield</name></country><country name="République tchèque"><noRegion><name sortKey="Klapst, Jaroslav" sort="Klapst, Jaroslav" uniqKey="Klapst J" first="Jaroslav" last="Klápšt">Jaroslav Klápšt</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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